Sample total_passed total_failed secondary_passed secondary_failed supplementary_passed supplementary_failed duplicates_passed duplicates_failed mapped_passed mapped_failed mapped_passed_pct mapped_failed_pct paired in sequencing_passed paired in sequencing_failed read1_passed read1_failed read2_passed read2_failed properly paired_passed properly paired_failed properly paired_passed_pct properly paired_failed_pct with itself and mate mapped_passed with itself and mate mapped_failed singletons_passed singletons_failed singletons_passed_pct singletons_failed_pct with mate mapped to a different chr_passed with mate mapped to a different chr_failed with mate mapped to a different chr (mapQ >= 5)_passed with mate mapped to a different chr (mapQ >= 5)_failed flagstat_total SRX7354049 98518408 0 5575820 0 0 0 29562183 0 93616528 0 95.02 nan 92942588 0 46471294 0 46471294 0 87995172 0 94.68 nan 87995172 0 45536 0 0.05 nan 0 0 0 0 98518408 SRX7354050 174034813 0 9734167 0 0 0 73415495 0 164415769 0 94.47 nan 164300646 0 82150323 0 82150323 0 154592514 0 94.09 nan 154592514 0 89088 0 0.05 nan 0 0 0 0 174034813 SRX7354051 69383515 0 3988273 0 0 0 21489228 0 65570732 0 94.5 nan 65395242 0 32697621 0 32697621 0 61540890 0 94.11 nan 61540890 0 41569 0 0.06 nan 0 0 0 0 69383515 SRX7354052 68657975 0 3849183 0 0 0 18195578 0 66004632 0 96.14 nan 64808792 0 32404396 0 32404396 0 62129060 0 95.87 nan 62129060 0 26389 0 0.04 nan 0 0 0 0 68657975 SRX7354053 120298041 0 6571399 0 0 0 38193133 0 108609243 0 90.28 nan 113726642 0 56863321 0 56863321 0 101967342 0 89.66 nan 101967342 0 70502 0 0.06 nan 0 0 0 0 120298041 SRX7354054 60938577 0 3299051 0 0 0 20770189 0 58945548 0 96.73 nan 57639526 0 28819763 0 28819763 0 55621360 0 96.5 nan 55621360 0 25137 0 0.04 nan 0 0 0 0 60938577 SRX7354055 112008287 0 7885643 0 0 0 45548337 0 109931316 0 98.15 nan 104122644 0 52061322 0 52061322 0 101972216 0 97.93 nan 101972216 0 73457 0 0.07 nan 0 0 0 0 112008287 SRX7354056 76550486 0 4660044 0 0 0 25420379 0 74435635 0 97.24 nan 71890442 0 35945221 0 35945221 0 69747436 0 97.02 nan 69747436 0 28155 0 0.04 nan 0 0 0 0 76550486 SRX7354057 81699244 0 5329694 0 0 0 25682533 0 79346136 0 97.12 nan 76369550 0 38184775 0 38184775 0 73981260 0 96.87 nan 73981260 0 35182 0 0.05 nan 0 0 0 0 81699244 SRX7354058 68441869 0 4300595 0 0 0 20709714 0 65730560 0 96.04 nan 64141274 0 32070637 0 32070637 0 61408474 0 95.74 nan 61408474 0 21491 0 0.03 nan 0 0 0 0 68441869 SRX7354059 70317110 0 4495926 0 0 0 15800006 0 68564599 0 97.51 nan 65821184 0 32910592 0 32910592 0 64040874 0 97.3 nan 64040874 0 27799 0 0.04 nan 0 0 0 0 70317110 SRX7354060 75371642 0 4332326 0 0 0 23176690 0 72510309 0 96.2 nan 71039316 0 35519658 0 35519658 0 68151316 0 95.93 nan 68151316 0 26667 0 0.04 nan 0 0 0 0 75371642 SRX7354061 99506073 0 6698635 0 0 0 51185813 0 96368813 0 96.85 nan 92807438 0 46403719 0 46403719 0 89627040 0 96.57 nan 89627040 0 43138 0 0.05 nan 0 0 0 0 99506073 SRX7354062 78143917 0 4262483 0 0 0 27819452 0 74441056 0 95.26 nan 73881434 0 36940717 0 36940717 0 70149856 0 94.95 nan 70149856 0 28717 0 0.04 nan 0 0 0 0 78143917 SRX7354063 90529509 0 7886055 0 0 0 46975353 0 86917844 0 96.01 nan 82643454 0 41321727 0 41321727 0 78987492 0 95.58 nan 78987492 0 44297 0 0.05 nan 0 0 0 0 90529509 SRX7354064 141819151 0 8890959 0 0 0 58200104 0 125651064 0 88.6 nan 132928192 0 66464096 0 66464096 0 116630986 0 87.74 nan 116630986 0 129119 0 0.1 nan 0 0 0 0 141819151 SRX7354065 76112141 0 5396443 0 0 0 31138447 0 70794072 0 93.01 nan 70715698 0 35357849 0 35357849 0 65355042 0 92.42 nan 65355042 0 42587 0 0.06 nan 0 0 0 0 76112141 SRX7354066 89097666 0 7431166 0 0 0 43522797 0 87454278 0 98.16 nan 81666500 0 40833250 0 40833250 0 79994992 0 97.95 nan 79994992 0 28120 0 0.03 nan 0 0 0 0 89097666 SRX7354067 65767570 0 4144222 0 0 0 21458583 0 63408166 0 96.41 nan 61623348 0 30811674 0 30811674 0 59238866 0 96.13 nan 59238866 0 25078 0 0.04 nan 0 0 0 0 65767570 SRX7354068 76667842 0 6340284 0 0 0 45318532 0 74218029 0 96.8 nan 70327558 0 35163779 0 35163779 0 67799420 0 96.41 nan 67799420 0 78325 0 0.11 nan 0 0 0 0 76667842 SRX7354069 123733703 0 8111135 0 0 0 47869648 0 120771362 0 97.61 nan 115622568 0 57811284 0 57811284 0 112623092 0 97.41 nan 112623092 0 37135 0 0.03 nan 0 0 0 0 123733703 SRX7354070 87218901 0 5193425 0 0 0 28093886 0 84010913 0 96.32 nan 82025476 0 41012738 0 41012738 0 78791822 0 96.06 nan 78791822 0 25666 0 0.03 nan 0 0 0 0 87218901 SRX7354071 99198117 0 8971495 0 0 0 50579976 0 96740860 0 97.52 nan 90226622 0 45113311 0 45113311 0 87734510 0 97.24 nan 87734510 0 34855 0 0.04 nan 0 0 0 0 99198117 SRX7354072 116340275 0 6396707 0 0 0 41458306 0 104702215 0 90.0 nan 109943568 0 54971784 0 54971784 0 98229642 0 89.35 nan 98229642 0 75866 0 0.07 nan 0 0 0 0 116340275 SRX7354073 90797052 0 5795574 0 0 0 27322732 0 88043530 0 96.97 nan 85001478 0 42500739 0 42500739 0 82214706 0 96.72 nan 82214706 0 33250 0 0.04 nan 0 0 0 0 90797052 SRX7354074 218344204 0 12730946 0 0 0 106040758 0 195027732 0 89.32 nan 205613258 0 102806629 0 102806629 0 182055482 0 88.54 nan 182055482 0 241304 0 0.12 nan 0 0 0 0 218344204 SRX7354075 104074616 0 9066156 0 0 0 48074823 0 101510585 0 97.54 nan 95008460 0 47504230 0 47504230 0 92399240 0 97.25 nan 92399240 0 45189 0 0.05 nan 0 0 0 0 104074616 SRX7354076 108994012 0 10118256 0 0 0 56230144 0 105792541 0 97.06 nan 98875756 0 49437878 0 49437878 0 95625028 0 96.71 nan 95625028 0 49257 0 0.05 nan 0 0 0 0 108994012 SRX7354077 176086003 0 9454211 0 0 0 80921336 0 163471885 0 92.84 nan 166631792 0 83315896 0 83315896 0 153853078 0 92.33 nan 153853078 0 164596 0 0.1 nan 0 0 0 0 176086003 SRX7354078 92194286 0 5832326 0 0 0 39081114 0 89570424 0 97.15 nan 86361960 0 43180980 0 43180980 0 83698418 0 96.92 nan 83698418 0 39680 0 0.05 nan 0 0 0 0 92194286 SRX7354079 122018095 0 8355863 0 0 0 44263204 0 110182154 0 90.3 nan 113662232 0 56831116 0 56831116 0 101734574 0 89.51 nan 101734574 0 91717 0 0.08 nan 0 0 0 0 122018095 SRX7354080 78162793 0 4152809 0 0 0 22993183 0 72131249 0 92.28 nan 74009984 0 37004992 0 37004992 0 67937928 0 91.8 nan 67937928 0 40512 0 0.05 nan 0 0 0 0 78162793 SRX7354081 93635457 0 9100859 0 0 0 43024134 0 87057297 0 92.97 nan 84534598 0 42267299 0 42267299 0 77874492 0 92.12 nan 77874492 0 81946 0 0.1 nan 0 0 0 0 93635457 SRX7354082 96983158 0 7641046 0 0 0 38050164 0 94720534 0 97.67 nan 89342112 0 44671056 0 44671056 0 87038834 0 97.42 nan 87038834 0 40654 0 0.05 nan 0 0 0 0 96983158 SRX7354083 66927528 0 3683392 0 0 0 21285175 0 64636701 0 96.58 nan 63244136 0 31622068 0 31622068 0 60928846 0 96.34 nan 60928846 0 24463 0 0.04 nan 0 0 0 0 66927528 SRX7354084 80084134 0 4505076 0 0 0 28458163 0 73699286 0 92.03 nan 75579058 0 37789529 0 37789529 0 69141550 0 91.48 nan 69141550 0 52660 0 0.07 nan 0 0 0 0 80084134 SRX7354085 112270165 0 6470939 0 0 0 40462117 0 105178227 0 93.68 nan 105799226 0 52899613 0 52899613 0 98663518 0 93.26 nan 98663518 0 43770 0 0.04 nan 0 0 0 0 112270165 SRX7354086 79612965 0 4464597 0 0 0 23622060 0 74179474 0 93.18 nan 75148368 0 37574184 0 37574184 0 69677424 0 92.72 nan 69677424 0 37453 0 0.05 nan 0 0 0 0 79612965 SRX7354087 149596600 0 8163448 0 0 0 73826619 0 138820358 0 92.8 nan 141433152 0 70716576 0 70716576 0 130553238 0 92.31 nan 130553238 0 103672 0 0.07 nan 0 0 0 0 149596600 SRX7354088 94726130 0 13333300 0 0 0 49661525 0 90347357 0 95.38 nan 81392830 0 40696415 0 40696415 0 76906608 0 94.49 nan 76906608 0 107449 0 0.13 nan 0 0 0 0 94726130 SRX7354089 91594699 0 4778011 0 0 0 36262578 0 83230503 0 90.87 nan 86816688 0 43408344 0 43408344 0 78405176 0 90.31 nan 78405176 0 47316 0 0.05 nan 0 0 0 0 91594699 SRX7354090 80758048 0 5454916 0 0 0 30040121 0 77329337 0 95.75 nan 75303132 0 37651566 0 37651566 0 71836630 0 95.4 nan 71836630 0 37791 0 0.05 nan 0 0 0 0 80758048 SRX7354091 148599040 0 9011114 0 0 0 62960302 0 143113385 0 96.31 nan 139587926 0 69793963 0 69793963 0 134021858 0 96.01 nan 134021858 0 80413 0 0.06 nan 0 0 0 0 148599040 SRX7354092 94769401 0 6481845 0 0 0 27206574 0 89927303 0 94.89 nan 88287556 0 44143778 0 44143778 0 83408092 0 94.47 nan 83408092 0 37366 0 0.04 nan 0 0 0 0 94769401 SRX7354093 78233482 0 3882018 0 0 0 31757884 0 72581466 0 92.78 nan 74351464 0 37175732 0 37175732 0 68665316 0 92.35 nan 68665316 0 34132 0 0.05 nan 0 0 0 0 78233482 SRX7354094 109165156 0 7082962 0 0 0 43141206 0 105863399 0 96.98 nan 102082194 0 51041097 0 51041097 0 98714556 0 96.7 nan 98714556 0 65881 0 0.06 nan 0 0 0 0 109165156 SRX7354095 73477103 0 4270119 0 0 0 26012721 0 67734611 0 92.18 nan 69206984 0 34603492 0 34603492 0 63432464 0 91.66 nan 63432464 0 32028 0 0.05 nan 0 0 0 0 73477103 SRX7354096 124652613 0 8405987 0 0 0 43931545 0 119426315 0 95.81 nan 116246626 0 58123313 0 58123313 0 110968802 0 95.46 nan 110968802 0 51526 0 0.04 nan 0 0 0 0 124652613 SRX7354097 163630279 0 12365571 0 0 0 88593422 0 158509928 0 96.87 nan 151264708 0 75632354 0 75632354 0 146073074 0 96.57 nan 146073074 0 71283 0 0.05 nan 0 0 0 0 163630279 SRX7354098 94251633 0 5870923 0 0 0 35874440 0 87732681 0 93.08 nan 88380710 0 44190355 0 44190355 0 81807092 0 92.56 nan 81807092 0 54666 0 0.06 nan 0 0 0 0 94251633 SRX7354099 74016628 0 4411598 0 0 0 28245141 0 69858176 0 94.38 nan 69605030 0 34802515 0 34802515 0 65402396 0 93.96 nan 65402396 0 44182 0 0.06 nan 0 0 0 0 74016628 SRX7354100 96015817 0 7212939 0 0 0 36670112 0 92994472 0 96.85 nan 88802878 0 44401439 0 44401439 0 85728724 0 96.54 nan 85728724 0 52809 0 0.06 nan 0 0 0 0 96015817 SRX7354101 76471093 0 3831397 0 0 0 26187724 0 64880934 0 84.84 nan 72639696 0 36319848 0 36319848 0 60920198 0 83.87 nan 60920198 0 129339 0 0.18 nan 0 0 0 0 76471093 SRX7354102 68535612 0 5103402 0 0 0 20739627 0 65234475 0 95.18 nan 63432210 0 31716105 0 31716105 0 60103286 0 94.75 nan 60103286 0 27787 0 0.04 nan 0 0 0 0 68535612 SRX7354103 82189349 0 5540949 0 0 0 29883473 0 79857218 0 97.16 nan 76648400 0 38324200 0 38324200 0 74286358 0 96.92 nan 74286358 0 29911 0 0.04 nan 0 0 0 0 82189349 SRX7354104 160328787 0 11090003 0 0 0 78484526 0 155246628 0 96.83 nan 149238784 0 74619392 0 74619392 0 144090886 0 96.55 nan 144090886 0 65739 0 0.04 nan 0 0 0 0 160328787 SRX7354105 114939305 0 6340985 0 0 0 43536177 0 106422720 0 92.59 nan 108598320 0 54299160 0 54299160 0 100025160 0 92.11 nan 100025160 0 56575 0 0.05 nan 0 0 0 0 114939305 SRX7354106 87436918 0 5679056 0 0 0 50810537 0 85246390 0 97.49 nan 81757862 0 40878931 0 40878931 0 79496728 0 97.23 nan 79496728 0 70606 0 0.09 nan 0 0 0 0 87436918 SRX7354107 109917697 0 6139895 0 0 0 41548065 0 102371307 0 93.13 nan 103777802 0 51888901 0 51888901 0 96178954 0 92.68 nan 96178954 0 52458 0 0.05 nan 0 0 0 0 109917697 SRX7354108 97882721 0 7222413 0 0 0 42138227 0 95743417 0 97.81 nan 90660308 0 45330154 0 45330154 0 88481756 0 97.6 nan 88481756 0 39248 0 0.04 nan 0 0 0 0 97882721 SRX7354109 104794255 0 5330937 0 0 0 38815677 0 96206842 0 91.81 nan 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0 95.28 nan 62799682 0 31399841 0 31399841 0 59629058 0 94.95 nan 59629058 0 27295 0 0.04 nan 0 0 0 0 66619953 SRX7354116 135019448 0 8553560 0 0 0 62100047 0 132928405 0 98.45 nan 126465888 0 63232944 0 63232944 0 124256762 0 98.25 nan 124256762 0 118083 0 0.09 nan 0 0 0 0 135019448 SRX7354117 68678875 0 4158399 0 0 0 24716644 0 67093216 0 97.69 nan 64520476 0 32260238 0 32260238 0 62906426 0 97.5 nan 62906426 0 28391 0 0.04 nan 0 0 0 0 68678875 SRX7354118 72488157 0 4493717 0 0 0 21433248 0 70848116 0 97.74 nan 67994440 0 33997220 0 33997220 0 66328786 0 97.55 nan 66328786 0 25613 0 0.04 nan 0 0 0 0 72488157 SRX7354119 128273837 0 7014793 0 0 0 51509387 0 119432590 0 93.11 nan 121259044 0 60629522 0 60629522 0 112342758 0 92.65 nan 112342758 0 75039 0 0.06 nan 0 0 0 0 128273837 SRX7354120 79302554 0 4390582 0 0 0 25763996 0 72676831 0 91.65 nan 74911972 0 37455986 0 37455986 0 68239744 0 91.09 nan 68239744 0 46505 0 0.06 nan 0 0 0 0 79302554 SRX7354121 76110082 0 4258810 0 0 0 24976684 0 72718384 0 95.54 nan 71851272 0 35925636 0 35925636 0 68435264 0 95.25 nan 68435264 0 24310 0 0.03 nan 0 0 0 0 76110082 SRX7354122 107609485 0 8136107 0 0 0 49164481 0 103108919 0 95.82 nan 99473378 0 49736689 0 49736689 0 94914220 0 95.42 nan 94914220 0 58592 0 0.06 nan 0 0 0 0 107609485 SRX7354123 103797370 0 11612748 0 0 0 36105485 0 101623516 0 97.91 nan 92184622 0 46092311 0 46092311 0 89915532 0 97.54 nan 89915532 0 95236 0 0.1 nan 0 0 0 0 103797370 SRX7354124 99907959 0 5110789 0 0 0 37938434 0 92685714 0 92.77 nan 94797170 0 47398585 0 47398585 0 87483440 0 92.28 nan 87483440 0 91485 0 0.1 nan 0 0 0 0 99907959 SRX7354125 78086604 0 4222472 0 0 0 22675752 0 70490484 0 90.27 nan 73864132 0 36932066 0 36932066 0 66230606 0 89.67 nan 66230606 0 37406 0 0.05 nan 0 0 0 0 78086604 SRX7354126 116962690 0 11112534 0 0 0 48321671 0 114520880 0 97.91 nan 105850156 0 52925078 0 52925078 0 103312560 0 97.6 nan 103312560 0 95786 0 0.09 nan 0 0 0 0 116962690 SRX7354127 183491427 0 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