#================================================== #All numbers are READ count #================================================== Total records: 69383515 QC failed: 0 Optical/PCR duplicate: 21489228 Non primary hits 3988273 Unmapped reads: 3812783 mapq < mapq_cut (non-unique): 1718704 mapq >= mapq_cut (unique): 38374527 Read-1: 19191070 Read-2: 19183457 Reads map to '+': 19187217 Reads map to '-': 19187310 Non-splice reads: 26963603 Splice reads: 11410924 Reads mapped in proper pairs: 38364284 Proper-paired reads map to different chrom:0