#================================================== #All numbers are READ count #================================================== Total records: 68657975 QC failed: 0 Optical/PCR duplicate: 18195578 Non primary hits 3849183 Unmapped reads: 2653343 mapq < mapq_cut (non-unique): 1742444 mapq >= mapq_cut (unique): 42217427 Read-1: 21111634 Read-2: 21105793 Reads map to '+': 21108716 Reads map to '-': 21108711 Non-splice reads: 30301745 Splice reads: 11915682 Reads mapped in proper pairs: 42208610 Proper-paired reads map to different chrom:0