#================================================== #All numbers are READ count #================================================== Total records: 60938577 QC failed: 0 Optical/PCR duplicate: 20770189 Non primary hits 3299051 Unmapped reads: 1993029 mapq < mapq_cut (non-unique): 1378936 mapq >= mapq_cut (unique): 33497372 Read-1: 16750813 Read-2: 16746559 Reads map to '+': 16748620 Reads map to '-': 16748752 Non-splice reads: 23837957 Splice reads: 9659415 Reads mapped in proper pairs: 33490402 Proper-paired reads map to different chrom:0