#================================================== #All numbers are READ count #================================================== Total records: 81699244 QC failed: 0 Optical/PCR duplicate: 25682533 Non primary hits 5329694 Unmapped reads: 2353108 mapq < mapq_cut (non-unique): 2054952 mapq >= mapq_cut (unique): 46278957 Read-1: 23142585 Read-2: 23136372 Reads map to '+': 23139344 Reads map to '-': 23139613 Non-splice reads: 31873532 Splice reads: 14405425 Reads mapped in proper pairs: 46270422 Proper-paired reads map to different chrom:0