#================================================== #All numbers are READ count #================================================== Total records: 70317110 QC failed: 0 Optical/PCR duplicate: 15800006 Non primary hits 4495926 Unmapped reads: 1752511 mapq < mapq_cut (non-unique): 1942818 mapq >= mapq_cut (unique): 46325849 Read-1: 23166251 Read-2: 23159598 Reads map to '+': 23162941 Reads map to '-': 23162908 Non-splice reads: 33561041 Splice reads: 12764808 Reads mapped in proper pairs: 46314940 Proper-paired reads map to different chrom:0