#================================================== #All numbers are READ count #================================================== Total records: 99506073 QC failed: 0 Optical/PCR duplicate: 51185813 Non primary hits 6698635 Unmapped reads: 3137260 mapq < mapq_cut (non-unique): 1770333 mapq >= mapq_cut (unique): 36714032 Read-1: 18358352 Read-2: 18355680 Reads map to '+': 18356986 Reads map to '-': 18357046 Non-splice reads: 26914471 Splice reads: 9799561 Reads mapped in proper pairs: 36707824 Proper-paired reads map to different chrom:0