#================================================== #All numbers are READ count #================================================== Total records: 78143917 QC failed: 0 Optical/PCR duplicate: 27819452 Non primary hits 4262483 Unmapped reads: 3702861 mapq < mapq_cut (non-unique): 1644092 mapq >= mapq_cut (unique): 40715029 Read-1: 20360110 Read-2: 20354919 Reads map to '+': 20357513 Reads map to '-': 20357516 Non-splice reads: 29208567 Splice reads: 11506462 Reads mapped in proper pairs: 40707502 Proper-paired reads map to different chrom:0