#================================================== #All numbers are READ count #================================================== Total records: 65767570 QC failed: 0 Optical/PCR duplicate: 21458583 Non primary hits 4144222 Unmapped reads: 2359404 mapq < mapq_cut (non-unique): 1608511 mapq >= mapq_cut (unique): 36196850 Read-1: 18100889 Read-2: 18095961 Reads map to '+': 18098310 Reads map to '-': 18098540 Non-splice reads: 24761389 Splice reads: 11435461 Reads mapped in proper pairs: 36189896 Proper-paired reads map to different chrom:0