#================================================== #All numbers are READ count #================================================== Total records: 123733703 QC failed: 0 Optical/PCR duplicate: 47869648 Non primary hits 8111135 Unmapped reads: 2962341 mapq < mapq_cut (non-unique): 2655741 mapq >= mapq_cut (unique): 62134838 Read-1: 31069130 Read-2: 31065708 Reads map to '+': 31067337 Reads map to '-': 31067501 Non-splice reads: 43982516 Splice reads: 18152322 Reads mapped in proper pairs: 62127374 Proper-paired reads map to different chrom:0