#================================================== #All numbers are READ count #================================================== Total records: 87218901 QC failed: 0 Optical/PCR duplicate: 28093886 Non primary hits 5193425 Unmapped reads: 3207988 mapq < mapq_cut (non-unique): 2027028 mapq >= mapq_cut (unique): 48696574 Read-1: 24350543 Read-2: 24346031 Reads map to '+': 24348202 Reads map to '-': 24348372 Non-splice reads: 34511769 Splice reads: 14184805 Reads mapped in proper pairs: 48689772 Proper-paired reads map to different chrom:0