#================================================== #All numbers are READ count #================================================== Total records: 99198117 QC failed: 0 Optical/PCR duplicate: 50579976 Non primary hits 8971495 Unmapped reads: 2457257 mapq < mapq_cut (non-unique): 1864811 mapq >= mapq_cut (unique): 35324578 Read-1: 17663399 Read-2: 17661179 Reads map to '+': 17662307 Reads map to '-': 17662271 Non-splice reads: 25930568 Splice reads: 9394010 Reads mapped in proper pairs: 35319528 Proper-paired reads map to different chrom:0