#================================================== #All numbers are READ count #================================================== Total records: 104074616 QC failed: 0 Optical/PCR duplicate: 48074823 Non primary hits 9066156 Unmapped reads: 2564031 mapq < mapq_cut (non-unique): 2103089 mapq >= mapq_cut (unique): 42266517 Read-1: 21134880 Read-2: 21131637 Reads map to '+': 21133263 Reads map to '-': 21133254 Non-splice reads: 31784476 Splice reads: 10482041 Reads mapped in proper pairs: 42260120 Proper-paired reads map to different chrom:0