#================================================== #All numbers are READ count #================================================== Total records: 122018095 QC failed: 0 Optical/PCR duplicate: 44263204 Non primary hits 8355863 Unmapped reads: 11835941 mapq < mapq_cut (non-unique): 2538268 mapq >= mapq_cut (unique): 55024819 Read-1: 27517875 Read-2: 27506944 Reads map to '+': 27512284 Reads map to '-': 27512535 Non-splice reads: 38188456 Splice reads: 16836363 Reads mapped in proper pairs: 55010046 Proper-paired reads map to different chrom:0