#================================================== #All numbers are READ count #================================================== Total records: 78162793 QC failed: 0 Optical/PCR duplicate: 22993183 Non primary hits 4152809 Unmapped reads: 6031544 mapq < mapq_cut (non-unique): 1772525 mapq >= mapq_cut (unique): 43212732 Read-1: 21609408 Read-2: 21603324 Reads map to '+': 21606311 Reads map to '-': 21606421 Non-splice reads: 30776505 Splice reads: 12436227 Reads mapped in proper pairs: 43202716 Proper-paired reads map to different chrom:0