#================================================== #All numbers are READ count #================================================== Total records: 93635457 QC failed: 0 Optical/PCR duplicate: 43024134 Non primary hits 9100859 Unmapped reads: 6578160 mapq < mapq_cut (non-unique): 1735431 mapq >= mapq_cut (unique): 33196873 Read-1: 16600484 Read-2: 16596389 Reads map to '+': 16598504 Reads map to '-': 16598369 Non-splice reads: 25091531 Splice reads: 8105342 Reads mapped in proper pairs: 33187346 Proper-paired reads map to different chrom:0