#================================================== #All numbers are READ count #================================================== Total records: 96983158 QC failed: 0 Optical/PCR duplicate: 38050164 Non primary hits 7641046 Unmapped reads: 2262624 mapq < mapq_cut (non-unique): 2169503 mapq >= mapq_cut (unique): 46859821 Read-1: 23432290 Read-2: 23427531 Reads map to '+': 23429893 Reads map to '-': 23429928 Non-splice reads: 33384939 Splice reads: 13474882 Reads mapped in proper pairs: 46851048 Proper-paired reads map to different chrom:0