#================================================== #All numbers are READ count #================================================== Total records: 80084134 QC failed: 0 Optical/PCR duplicate: 28458163 Non primary hits 4505076 Unmapped reads: 6384848 mapq < mapq_cut (non-unique): 1733680 mapq >= mapq_cut (unique): 39002367 Read-1: 19504582 Read-2: 19497785 Reads map to '+': 19501148 Reads map to '-': 19501219 Non-splice reads: 27017379 Splice reads: 11984988 Reads mapped in proper pairs: 38992788 Proper-paired reads map to different chrom:0