#================================================== #All numbers are READ count #================================================== Total records: 79612965 QC failed: 0 Optical/PCR duplicate: 23622060 Non primary hits 4464597 Unmapped reads: 5433491 mapq < mapq_cut (non-unique): 1953019 mapq >= mapq_cut (unique): 44139798 Read-1: 22073190 Read-2: 22066608 Reads map to '+': 22069833 Reads map to '-': 22069965 Non-splice reads: 30013482 Splice reads: 14126316 Reads mapped in proper pairs: 44130904 Proper-paired reads map to different chrom:0