#================================================== #All numbers are READ count #================================================== Total records: 91594699 QC failed: 0 Optical/PCR duplicate: 36262578 Non primary hits 4778011 Unmapped reads: 8364196 mapq < mapq_cut (non-unique): 1722672 mapq >= mapq_cut (unique): 40467242 Read-1: 20236649 Read-2: 20230593 Reads map to '+': 20233578 Reads map to '-': 20233664 Non-splice reads: 28545962 Splice reads: 11921280 Reads mapped in proper pairs: 40458630 Proper-paired reads map to different chrom:0