#================================================== #All numbers are READ count #================================================== Total records: 148599040 QC failed: 0 Optical/PCR duplicate: 62960302 Non primary hits 9011114 Unmapped reads: 5485655 mapq < mapq_cut (non-unique): 2990824 mapq >= mapq_cut (unique): 68151145 Read-1: 34079871 Read-2: 34071274 Reads map to '+': 34075552 Reads map to '-': 34075593 Non-splice reads: 45796186 Splice reads: 22354959 Reads mapped in proper pairs: 68139274 Proper-paired reads map to different chrom:0