#================================================== #All numbers are READ count #================================================== Total records: 94769401 QC failed: 0 Optical/PCR duplicate: 27206574 Non primary hits 6481845 Unmapped reads: 4842098 mapq < mapq_cut (non-unique): 2436020 mapq >= mapq_cut (unique): 53802864 Read-1: 26904391 Read-2: 26898473 Reads map to '+': 26901454 Reads map to '-': 26901410 Non-splice reads: 37601951 Splice reads: 16200913 Reads mapped in proper pairs: 53792946 Proper-paired reads map to different chrom:0