#================================================== #All numbers are READ count #================================================== Total records: 73477103 QC failed: 0 Optical/PCR duplicate: 26012721 Non primary hits 4270119 Unmapped reads: 5742492 mapq < mapq_cut (non-unique): 1606313 mapq >= mapq_cut (unique): 35845458 Read-1: 17925485 Read-2: 17919973 Reads map to '+': 17922677 Reads map to '-': 17922781 Non-splice reads: 24820355 Splice reads: 11025103 Reads mapped in proper pairs: 35837432 Proper-paired reads map to different chrom:0