#================================================== #All numbers are READ count #================================================== Total records: 124652613 QC failed: 0 Optical/PCR duplicate: 43931545 Non primary hits 8405987 Unmapped reads: 5226298 mapq < mapq_cut (non-unique): 2911403 mapq >= mapq_cut (unique): 64177380 Read-1: 32092338 Read-2: 32085042 Reads map to '+': 32088758 Reads map to '-': 32088622 Non-splice reads: 45575221 Splice reads: 18602159 Reads mapped in proper pairs: 64166616 Proper-paired reads map to different chrom:0