#================================================== #All numbers are READ count #================================================== Total records: 163630279 QC failed: 0 Optical/PCR duplicate: 88593422 Non primary hits 12365571 Unmapped reads: 5120351 mapq < mapq_cut (non-unique): 2447850 mapq >= mapq_cut (unique): 55103085 Read-1: 27553406 Read-2: 27549679 Reads map to '+': 27551472 Reads map to '-': 27551613 Non-splice reads: 41085413 Splice reads: 14017672 Reads mapped in proper pairs: 55094854 Proper-paired reads map to different chrom:0