#================================================== #All numbers are READ count #================================================== Total records: 94251633 QC failed: 0 Optical/PCR duplicate: 35874440 Non primary hits 5870923 Unmapped reads: 6518952 mapq < mapq_cut (non-unique): 1970966 mapq >= mapq_cut (unique): 44016352 Read-1: 22012344 Read-2: 22004008 Reads map to '+': 22008050 Reads map to '-': 22008302 Non-splice reads: 30825991 Splice reads: 13190361 Reads mapped in proper pairs: 44005442 Proper-paired reads map to different chrom:0