#================================================== #All numbers are READ count #================================================== Total records: 76471093 QC failed: 0 Optical/PCR duplicate: 26187724 Non primary hits 3831397 Unmapped reads: 11590159 mapq < mapq_cut (non-unique): 1502211 mapq >= mapq_cut (unique): 33359602 Read-1: 16689040 Read-2: 16670562 Reads map to '+': 16679859 Reads map to '-': 16679743 Non-splice reads: 23929020 Splice reads: 9430582 Reads mapped in proper pairs: 33335086 Proper-paired reads map to different chrom:0