#================================================== #All numbers are READ count #================================================== Total records: 68535612 QC failed: 0 Optical/PCR duplicate: 20739627 Non primary hits 5103402 Unmapped reads: 3301137 mapq < mapq_cut (non-unique): 1672286 mapq >= mapq_cut (unique): 37719160 Read-1: 18862218 Read-2: 18856942 Reads map to '+': 18859560 Reads map to '-': 18859600 Non-splice reads: 27277331 Splice reads: 10441829 Reads mapped in proper pairs: 37711624 Proper-paired reads map to different chrom:0