#================================================== #All numbers are READ count #================================================== Total records: 114939305 QC failed: 0 Optical/PCR duplicate: 43536177 Non primary hits 6340985 Unmapped reads: 8516585 mapq < mapq_cut (non-unique): 2290885 mapq >= mapq_cut (unique): 54254673 Read-1: 27130710 Read-2: 27123963 Reads map to '+': 27127273 Reads map to '-': 27127400 Non-splice reads: 38179271 Splice reads: 16075402 Reads mapped in proper pairs: 54244168 Proper-paired reads map to different chrom:0