#================================================== #All numbers are READ count #================================================== Total records: 109917697 QC failed: 0 Optical/PCR duplicate: 41548065 Non primary hits 6139895 Unmapped reads: 7546390 mapq < mapq_cut (non-unique): 2204073 mapq >= mapq_cut (unique): 52479274 Read-1: 26242654 Read-2: 26236620 Reads map to '+': 26239588 Reads map to '-': 26239686 Non-splice reads: 37561451 Splice reads: 14917823 Reads mapped in proper pairs: 52469652 Proper-paired reads map to different chrom:0