#================================================== #All numbers are READ count #================================================== Total records: 104794255 QC failed: 0 Optical/PCR duplicate: 38815677 Non primary hits 5330937 Unmapped reads: 8587413 mapq < mapq_cut (non-unique): 2022724 mapq >= mapq_cut (unique): 50037504 Read-1: 25022986 Read-2: 25014518 Reads map to '+': 25018785 Reads map to '-': 25018719 Non-splice reads: 35360664 Splice reads: 14676840 Reads mapped in proper pairs: 50023950 Proper-paired reads map to different chrom:0