#================================================== #All numbers are READ count #================================================== Total records: 98863470 QC failed: 0 Optical/PCR duplicate: 44318773 Non primary hits 5119284 Unmapped reads: 8982627 mapq < mapq_cut (non-unique): 1602393 mapq >= mapq_cut (unique): 38840393 Read-1: 19424355 Read-2: 19416038 Reads map to '+': 19420111 Reads map to '-': 19420282 Non-splice reads: 28336234 Splice reads: 10504159 Reads mapped in proper pairs: 38823664 Proper-paired reads map to different chrom:0