#================================================== #All numbers are READ count #================================================== Total records: 86409931 QC failed: 0 Optical/PCR duplicate: 28748575 Non primary hits 4297185 Unmapped reads: 7406477 mapq < mapq_cut (non-unique): 1772076 mapq >= mapq_cut (unique): 44185618 Read-1: 22095634 Read-2: 22089984 Reads map to '+': 22092755 Reads map to '-': 22092863 Non-splice reads: 31407139 Splice reads: 12778479 Reads mapped in proper pairs: 44176112 Proper-paired reads map to different chrom:0