#================================================== #All numbers are READ count #================================================== Total records: 146593130 QC failed: 0 Optical/PCR duplicate: 70002719 Non primary hits 8277814 Unmapped reads: 6184588 mapq < mapq_cut (non-unique): 2574595 mapq >= mapq_cut (unique): 59553414 Read-1: 29779933 Read-2: 29773481 Reads map to '+': 29776688 Reads map to '-': 29776726 Non-splice reads: 40047524 Splice reads: 19505890 Reads mapped in proper pairs: 59543504 Proper-paired reads map to different chrom:0