#================================================== #All numbers are READ count #================================================== Total records: 66619953 QC failed: 0 Optical/PCR duplicate: 16977156 Non primary hits 3820271 Unmapped reads: 3143329 mapq < mapq_cut (non-unique): 1766275 mapq >= mapq_cut (unique): 40912922 Read-1: 20458816 Read-2: 20454106 Reads map to '+': 20456367 Reads map to '-': 20456555 Non-splice reads: 28304167 Splice reads: 12608755 Reads mapped in proper pairs: 40905182 Proper-paired reads map to different chrom:0