#================================================== #All numbers are READ count #================================================== Total records: 135019448 QC failed: 0 Optical/PCR duplicate: 62100047 Non primary hits 8553560 Unmapped reads: 2091043 mapq < mapq_cut (non-unique): 2802751 mapq >= mapq_cut (unique): 59472047 Read-1: 29740858 Read-2: 29731189 Reads map to '+': 29736020 Reads map to '-': 29736027 Non-splice reads: 38935649 Splice reads: 20536398 Reads mapped in proper pairs: 59452778 Proper-paired reads map to different chrom:0