#================================================== #All numbers are READ count #================================================== Total records: 68678875 QC failed: 0 Optical/PCR duplicate: 24716644 Non primary hits 4158399 Unmapped reads: 1585659 mapq < mapq_cut (non-unique): 1591905 mapq >= mapq_cut (unique): 36626268 Read-1: 18315397 Read-2: 18310871 Reads map to '+': 18313084 Reads map to '-': 18313184 Non-splice reads: 24799250 Splice reads: 11827018 Reads mapped in proper pairs: 36619184 Proper-paired reads map to different chrom:0