#================================================== #All numbers are READ count #================================================== Total records: 72488157 QC failed: 0 Optical/PCR duplicate: 21433248 Non primary hits 4493717 Unmapped reads: 1640041 mapq < mapq_cut (non-unique): 1848538 mapq >= mapq_cut (unique): 43072613 Read-1: 21538706 Read-2: 21533907 Reads map to '+': 21536259 Reads map to '-': 21536354 Non-splice reads: 30658271 Splice reads: 12414342 Reads mapped in proper pairs: 43065480 Proper-paired reads map to different chrom:0