#================================================== #All numbers are READ count #================================================== Total records: 76110082 QC failed: 0 Optical/PCR duplicate: 24976684 Non primary hits 4258810 Unmapped reads: 3391698 mapq < mapq_cut (non-unique): 1753384 mapq >= mapq_cut (unique): 41729506 Read-1: 20866460 Read-2: 20863046 Reads map to '+': 20864715 Reads map to '-': 20864791 Non-splice reads: 28969265 Splice reads: 12760241 Reads mapped in proper pairs: 41723452 Proper-paired reads map to different chrom:0