#================================================== #All numbers are READ count #================================================== Total records: 78086604 QC failed: 0 Optical/PCR duplicate: 22675752 Non primary hits 4222472 Unmapped reads: 7596120 mapq < mapq_cut (non-unique): 1778709 mapq >= mapq_cut (unique): 41813551 Read-1: 20910047 Read-2: 20903504 Reads map to '+': 20906674 Reads map to '-': 20906877 Non-splice reads: 28702346 Splice reads: 13111205 Reads mapped in proper pairs: 41803990 Proper-paired reads map to different chrom:0