#================================================== #All numbers are READ count #================================================== Total records: 104727270 QC failed: 0 Optical/PCR duplicate: 40090646 Non primary hits 5969092 Unmapped reads: 6763126 mapq < mapq_cut (non-unique): 2148223 mapq >= mapq_cut (unique): 49756183 Read-1: 24884646 Read-2: 24871537 Reads map to '+': 24878017 Reads map to '-': 24878166 Non-splice reads: 35248413 Splice reads: 14507770 Reads mapped in proper pairs: 49739572 Proper-paired reads map to different chrom:0