#================================================== #All numbers are READ count #================================================== Total records: 88196644 QC failed: 0 Optical/PCR duplicate: 32449026 Non primary hits 5070774 Unmapped reads: 2767706 mapq < mapq_cut (non-unique): 1904448 mapq >= mapq_cut (unique): 46004690 Read-1: 23004364 Read-2: 23000326 Reads map to '+': 23002325 Reads map to '-': 23002365 Non-splice reads: 32056481 Splice reads: 13948209 Reads mapped in proper pairs: 45998206 Proper-paired reads map to different chrom:0