#================================================== #All numbers are READ count #================================================== Total records: 85484901 QC failed: 0 Optical/PCR duplicate: 34044660 Non primary hits 4770655 Unmapped reads: 5957702 mapq < mapq_cut (non-unique): 1674366 mapq >= mapq_cut (unique): 39037518 Read-1: 19520996 Read-2: 19516522 Reads map to '+': 19518664 Reads map to '-': 19518854 Non-splice reads: 27488610 Splice reads: 11548908 Reads mapped in proper pairs: 39030280 Proper-paired reads map to different chrom:0