#================================================== #All numbers are READ count #================================================== Total records: 114300327 QC failed: 0 Optical/PCR duplicate: 42080555 Non primary hits 6743005 Unmapped reads: 3401383 mapq < mapq_cut (non-unique): 2511944 mapq >= mapq_cut (unique): 59563440 Read-1: 29786212 Read-2: 29777228 Reads map to '+': 29781660 Reads map to '-': 29781780 Non-splice reads: 42194739 Splice reads: 17368701 Reads mapped in proper pairs: 59550746 Proper-paired reads map to different chrom:0