#================================================== #All numbers are READ count #================================================== Total records: 99524313 QC failed: 0 Optical/PCR duplicate: 38553872 Non primary hits 8450237 Unmapped reads: 2417198 mapq < mapq_cut (non-unique): 2289029 mapq >= mapq_cut (unique): 47813977 Read-1: 23908605 Read-2: 23905372 Reads map to '+': 23906977 Reads map to '-': 23907000 Non-splice reads: 33987737 Splice reads: 13826240 Reads mapped in proper pairs: 47807106 Proper-paired reads map to different chrom:0