#================================================== #All numbers are READ count #================================================== Total records: 92219584 QC failed: 0 Optical/PCR duplicate: 34447930 Non primary hits 5484836 Unmapped reads: 1906390 mapq < mapq_cut (non-unique): 2049436 mapq >= mapq_cut (unique): 48330992 Read-1: 24166455 Read-2: 24164537 Reads map to '+': 24165506 Reads map to '-': 24165486 Non-splice reads: 34170891 Splice reads: 14160101 Reads mapped in proper pairs: 48325306 Proper-paired reads map to different chrom:0