#================================================== #All numbers are READ count #================================================== Total records: 94567432 QC failed: 0 Optical/PCR duplicate: 46042738 Non primary hits 6559704 Unmapped reads: 2070928 mapq < mapq_cut (non-unique): 1763863 mapq >= mapq_cut (unique): 38130199 Read-1: 19066397 Read-2: 19063802 Reads map to '+': 19065126 Reads map to '-': 19065073 Non-splice reads: 27621140 Splice reads: 10509059 Reads mapped in proper pairs: 38124510 Proper-paired reads map to different chrom:0