#================================================== #All numbers are READ count #================================================== Total records: 91487979 QC failed: 0 Optical/PCR duplicate: 52721393 Non primary hits 6378173 Unmapped reads: 1498271 mapq < mapq_cut (non-unique): 1615479 mapq >= mapq_cut (unique): 29274663 Read-1: 14639678 Read-2: 14634985 Reads map to '+': 14637384 Reads map to '-': 14637279 Non-splice reads: 19222414 Splice reads: 10052249 Reads mapped in proper pairs: 29262384 Proper-paired reads map to different chrom:0