#================================================== #All numbers are READ count #================================================== Total records: 64371020 QC failed: 0 Optical/PCR duplicate: 19346739 Non primary hits 3707210 Unmapped reads: 3004879 mapq < mapq_cut (non-unique): 1550325 mapq >= mapq_cut (unique): 36761867 Read-1: 18383535 Read-2: 18378332 Reads map to '+': 18380952 Reads map to '-': 18380915 Non-splice reads: 25298294 Splice reads: 11463573 Reads mapped in proper pairs: 36753850 Proper-paired reads map to different chrom:0