#================================================== #All numbers are READ count #================================================== Total records: 93666769 QC failed: 0 Optical/PCR duplicate: 47143583 Non primary hits 7854627 Unmapped reads: 4250922 mapq < mapq_cut (non-unique): 1841643 mapq >= mapq_cut (unique): 32575994 Read-1: 16291215 Read-2: 16284779 Reads map to '+': 16288053 Reads map to '-': 16287941 Non-splice reads: 22326716 Splice reads: 10249278 Reads mapped in proper pairs: 32556132 Proper-paired reads map to different chrom:0